Showing posts with label genes. Show all posts
Showing posts with label genes. Show all posts

Increased burden of deleterious variants in essential genes in autism spectrum disorder

Autism spectrum disorder (ASD) is a heterogeneous, highly heritable neurodevelopmental syndrome characterized by impaired social interaction, communication, and repetitive behavior. It is estimated that hundreds of genes contribute to ASD. We asked if genes with a strong effect on survival and fitness contribute to ASD risk. Human orthologs of genes with an essential role in pre- and postnatal development in the mouse [essential genes (EGs)] are enriched for disease genes and under strong purifying selection relative to human orthologs of mouse genes with a known nonlethal phenotype [nonessential genes (NEGs)]. This intolerance to deleterious mutations, commonly observed haploinsufficiency, and the importance of EGs in development suggest a possible cumulative effect of deleterious variants in EGs on complex neurodevelopmental disorders. With a comprehensive catalog of 3,915 mammalian EGs, we provide compelling evidence for a stronger contribution of EGs to ASD risk compared with NEGs. By examining the exonic de novo and inherited variants from 1,781 ASD quartet families, we show a significantly higher burden of damaging mutations in EGs in ASD probands compared with their non-ASD siblings. The analysis of EGs in the developing brain identified clusters of coexpressed EGs implicated in ASD. Finally, we suggest a high-priority list of 29 EGs with potential ASD risk as targets for future functional and behavioral studies. Overall, we show that large-scale studies of gene function in model organisms provide a powerful approach for prioritization of genes and pathogenic variants identified by sequencing studies of human disease."



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Scientists discover genetic mutation that causes Parkinson's disease

A large team of international researchers have identified a new genetic cause of inherited Parkinson's disease that they say may be related to the inability of brain cells to handle biological stress. The study, published in the September issue of the American Journal of Human Genetics, continues to fill in the picture of Parkinson's disease as a complex disorder influenced by multiple genes, say neuroscientists at Mayo Clinic's campus in Florida who helped lead the investigation. The gene is EIF4G1 a translation initiation factor controlling theinitial steps of protein synthesis from mRNA (see KEGG pathway)
Parkinson's disease genes and risk factors 
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Intestinal protein may have role in ADHD, other neurological disorders

The gene is guanylyl cyclase-C


 ADHD genes and risk factors 
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Knome Assists Canadian Team Identify Parkinson’s Disease Gene - Bio-IT World

The gene involved, isolated from a family with a form of inherited Parkinson's  disease, is VPS35 which is involved in the retrograde transport of proteins from endosomes to the trans-Golgi network and is a component of the retromer


Parkinson's disease genes, risk factors and pathways 

Genes and risk factors in attention deficit hyperactivity disorder

This page details several of the environmental risk factors (infections, allergies, pesticides and pollutants) and susceptibility genes that have been implicated in  attention deficit hyperactivity disorder
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Cells may stray from 'central dogma' : Nature News

The central dogma: DNA makes RNA makes protein: Still true, but sometimes the RNA is not that predicted by the DNA , and has been edited: The protein is copied from the RNA and in these edited cases the protein sequence reflects the RNA and not the original DNA sequence. It is of course the proteins that provide the function, so what does this mean in terms of gene association and other studies ? Identical genes in different individuals need not necessarily make an identical protein. Look out for a flurry of RNA polymorphisms ?

Four new genes for Alzheimer's disease risk identified

The four new genes for Alzheimer's disease risk were MS4A (unknown function) , CD2AP (a scaffolding molecule that regulates the actin cytoskeleton), CD33, and the ephrin receptor EPHA1

Risk factors: Alzheimer's : Kegg pathways Alzheimer's Herpes simplex infection 
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KEGG pathway analysis of over 400 Bipolar disorder susceptibility genes

These pathways, etched out by hundreds of genes, pre and post GWAS,  include many brain related pathways, but also many related to the immune system and pathogen entry pathways. Pathogen risk factors are referenced here Bipolar disorder risk factors This trilogy appears to be a common theme in these polygenic diseases and the genes are implicated in brain and neurotransmitter pathology but also in the the life cycles of the pathogens implicated as risk factors.

Other Kegg pathways Alzheimer's Parkinson's Schizophrenia Herpes simplex infection Cystic fibrosis CFTR interactome
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Schizophrenia Gene Mutation Discovered: Vasoactive intestinal peptide receptor (VIPR2)

This looks like a big one, a VIPR2 (vasoactive intestinal polypeptide receptor) duplication at the tip of chromosome 7q - 14 times more common than in controls- also highlighted in another simultaneous study by Levinsonn et al : Interestingly, regulates the circadian clock and a major regulator of T cells in the immune system. IUPHAR Data

Risk factors:   Schizophrenia  
Kegg pathways Schizophrenia
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